Research Tools on the Web

Genetic Databases

Human (OMIM, gnomAD, ExAC) • Mouse (MGI, Sanger, WebQTL) • Rat (RGD) • Zebrafish (ZFIN) • Drosophila (FlyBase) • C. elegans (WormBase) • Saccharomyces (SDB) • Kyoto Encyclopedia of Genes & Genomes (KEGG)

Genome Browsers

UCSC • NCBI • Ensembl • JGI • IGV (download) • Galaxy • ECR • SynoR

Gene Expression

Allen Brain Atlas • CGAP • EurExpress • GenePaint • GenSat • Mouse GXD • RIKEN brain • Clone SOURCE

Protein Annotation & Interaction

InterPro • Panther • SMART • BioGrid • String • IntAct

SNP Data & Prediction

dbSNP • Perlegen mouse (UCLA) • PolyPhen-2 • SIFT • PON-P2 • CADD • ClinVar

Sequence Alignment

BLAST • Clustal • COBALT • MAFFT • MUSCLE • VISTA

Sequence Selection

Primers (Primer3, Primer3+, IDT Tools) • CRISPR (original, chopchop, crispor, e-crisp) • GenScan • Translate • ReverseComplement

Statistics

R (CRAN) • SAM • VassarStats

Zoology

Berkeley metazoa • Metazome • TimeTree

Other tool pages

EBI • ExPASy • NCBI